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Issue #3419 has been updated by Travis Wrightsman.
<ul>
<li><strong>Status</strong> changed from <i>New</i> to <i>Closed</i></li>
<li><strong>% Done</strong> changed from <i>0</i> to <i>100</i></li>
<li><strong>URL</strong> set to <i>https://github.com/biopython/biopython/issues/886</i></li>
</ul>
<p>Migrated to GitHub, see URL.</p>
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<h1><a href="https://redmine.open-bio.org/issues/3419#change-15302">Bug #3419: Bio.SearchIO.FastaIO</a></h1>
<ul><li>Author: Jason Stajich</li>
<li>Status: Closed</li>
<li>Priority: Low</li>
<li>Assignee: Biopython Dev Mailing List</li>
<li>Category: Main Distribution</li>
<li>Target version: </li>
<li>URL: https://github.com/biopython/biopython/issues/886</li></ul>
<p>The strand of the translated sequence (query or subject depending on the analysis) is lost for tfastxy and fastx/y reports.</p>
<p>from Bio import SearchIO<br />qresults = SearchIO.parse('test.FASTY.out','fasta-m10')<br />for qresult in qresults:<br /> for hit in qresult:<br /> for hsp in hit.hsps:<br /> print qresult.id, " ", hit.id, " ", \<br /> hsp.query_start, "..",hsp.query_end, " ", hsp.query_strand, " ", \<br /> hsp.hit_start, "..",hsp.hit_end, " ", hsp.hit_strand</p>
<fieldset class="attachments"><legend>Files</legend>
<a href="https://redmine.open-bio.org/attachments/download/1759/bll0026-vs-94.tfasty">bll0026-vs-94.tfasty</a>
(32.8 KB)<br />
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