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Issue #3384 has been updated by Peter Cock.
<ul>
<li><strong>Status</strong> changed from <i>New</i> to <i>Closed</i></li>
<li><strong>% Done</strong> changed from <i>0</i> to <i>100</i></li>
</ul>
<p>"pip install biopython" seems to be working nowadays, belatedly closing this issue.</p>
<hr />
<h1><a href="https://redmine.open-bio.org/issues/3384#change-15299">Bug #3384: Installation fails with pip-3.2</a></h1>
<ul><li>Author: Roy Crihfield</li>
<li>Status: Closed</li>
<li>Priority: Normal</li>
<li>Assignee: Biopython Dev Mailing List</li>
<li>Category: Main Distribution</li>
<li>Target version: </li>
<li>URL: </li></ul>
<p>Linux 3.5.3-1-ARCH x86_64 GNU/Linux<br />Python 3.2.3<br />Bio.__version__ == '1.60'</p>
<p>Installation fails with with pip 1.2:</p>
<p>$ sudo pip-3.2 install biopython</p>
<p>:<br />:</p>
<p>Converting build/py3.2/Doc/examples/fasta_dictionary.py</p>
<p>Converting build/py3.2/Doc/examples/nmr/simplepredict.py</p>
<p>Python 2to3 processing done.</p>
<p>running egg_info</p>
<p>error: error in 'egg_base' option: 'pip-egg-info' does not exist or is not a directory</p>
<hr />
<p>Command python setup.py egg_info failed with error code 1 in /tmp/pip-build/biopython</p>
<p>Exception information:<br />Traceback (most recent call last):<br /> File "/usr/lib/python3.2/site-packages/pip-1.2-py3.2.egg/pip/basecommand.py", line 106, in main<br /> status = self.run(options, args)<br /> File "/usr/lib/python3.2/site-packages/pip-1.2-py3.2.egg/pip/commands/install.py", line 256, in run<br /> requirement_set.prepare_files(finder, force_root_egg_info=self.bundle, bundle=self.bundle)<br /> File "/usr/lib/python3.2/site-packages/pip-1.2-py3.2.egg/pip/req.py", line 1042, in prepare_files<br /> req_to_install.run_egg_info()<br /> File "/usr/lib/python3.2/site-packages/pip-1.2-py3.2.egg/pip/req.py", line 236, in run_egg_info<br /> command_desc='python setup.py egg_info')<br /> File "/usr/lib/python3.2/site-packages/pip-1.2-py3.2.egg/pip/util.py", line 612, in call_subprocess<br /> % (command_desc, proc.returncode, cwd))<br />pip.exceptions.InstallationError: Command python setup.py egg_info failed with error code 1 in /tmp/pip-build/bi!
opython</p>
<fieldset class="attachments"><legend>Files</legend>
<a href="https://redmine.open-bio.org/attachments/download/1739/pip.log">pip.log</a>
(85.9 KB)<br />
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