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A Windows built-in tool is certUtil:<br>
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certUtil -hashfile pathToFileToCheck [HashAlgorithm]<br>
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HashAlgorithms: MD2 MD4 MD5 SHA1 SHA256 SHA384 SHA512<br>
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I have biopython-1.58.win32-py2.7.exe:<br>
MD5: c4 45 46 34 3c 3d 2b 1d c9 77 24 81 74 85 84 e4<br>
SHA256: 2f 55 ee 34 df 39 e8 0d d7 cb 46 69 4a 1f 55 52 f1 4a 53 37
42 a0 a8 18 52 3b ee 6e 72 cc be 2c<br>
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<div class="moz-cite-prefix">Am 18.05.2016 um 12:26 schrieb Peter
Cock:<br>
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cite="mid:CAKVJ-_6zjN0AWXLmXvqhMF8gSQ2ocSgGAPNcharRj+F3v_=-Sw@mail.gmail.com"
type="cite">
<pre wrap="">Hello all,
Thanks to community contributions, we've verified all the past
*.tar.gz releases, which in turn let me check all the *.zip files too.
I've also verified the most recent Windows installers for
Biopython 1.65 and 1.66, but for historical completeness I would
like to verify the checksums for all the older Windows releases.
If anyone still has copies of the older Biopython installers
(e.g. on older backup disks), please get in touch.
You can use the mailing list, GitHub issue, or email me directly:
<a class="moz-txt-link-freetext" href="https://github.com/biopython/biopython.github.io/issues/7">https://github.com/biopython/biopython.github.io/issues/7</a>
Thank you!
Peter
On Tue, Apr 26, 2016 at 9:29 AM, Peter Cock <a class="moz-txt-link-rfc2396E" href="mailto:p.j.a.cock@googlemail.com"><p.j.a.cock@googlemail.com></a> wrote:
</pre>
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<pre wrap="">Hello all,
Good news: All the *.tar.gz files have been checked now.
However, help is still needed: Most of the *.exe files have not
been checked yet. Also most of the *.zip files, but those are
not as important.
--
Many thanks to Martin Mokrejs who had a lot of the recent
tar-balls, which has filled out most of the recent releases.
Martin and Andrey also suggested looking at the checksums
recorded by Ubuntu within their packaging .dsc files, although
unfortunately that does not seem to help - I think they must
recompress as .tar.xy before taking the checksums:
<a class="moz-txt-link-freetext" href="http://archive.ubuntu.com/ubuntu/pool/universe/p/python-biopython/">http://archive.ubuntu.com/ubuntu/pool/universe/p/python-biopython/</a>
They also mentioned Gentoo, whose git repository covers our
Biopython 1.65 and 1.66 releases so far:
<a class="moz-txt-link-freetext" href="https://github.com/gentoo/gentoo/blob/master/sci-biology/biopython/Manifest">https://github.com/gentoo/gentoo/blob/master/sci-biology/biopython/Manifest</a>
And their CVS which older checksums...
<a class="moz-txt-link-freetext" href="https://sources.gentoo.org/cgi-bin/viewvc.cgi/gentoo-x86/sci-biology/biopython/Manifest?view=log">https://sources.gentoo.org/cgi-bin/viewvc.cgi/gentoo-x86/sci-biology/biopython/Manifest?view=log</a>
Thanks to this I think I have now independently verified all the
Biopython *.tar.gz release files, and am currently trying to upload
them to GitHub at <a class="moz-txt-link-freetext" href="https://github.com/biopython/DIST">https://github.com/biopython/DIST</a>
Peter
On Mon, Apr 25, 2016 at 11:01 PM, Peter Cock <a class="moz-txt-link-rfc2396E" href="mailto:p.j.a.cock@googlemail.com"><p.j.a.cock@googlemail.com></a> wrote:
</pre>
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<pre wrap="">Dear Biopython developers,
Thank you to everyone who has helped with the website
migration to GitHub - I think this has gone pretty well overall:
<a class="moz-txt-link-freetext" href="https://biopython.org">https://biopython.org</a>
The good news is the new GitHub Pages website seems to
be working nicely, and during this we've updated a lot of older
content. While there is still lots to fine tune, for me this is the
biggest remaining issue:
*Providing all the past releases via GitHub Pages*
<a class="moz-txt-link-freetext" href="https://github.com/biopython/biopython.github.io/issues/7">https://github.com/biopython/biopython.github.io/issues/7</a>
The sudden Biopython website migration was forced by the old
server failing after it was hacked to host spam advertising.
I would like your help here with verifying the checksums of our
past releases before putting them back online - just in case any
of the files rescued from the old server were corrupted when it
was hacked to host spam adverts. All the files checked so far
are fine, so this is likely just me being paranoid.
If anyone has old cached Biopython files under their Downloads
folder etc, could you reply with their checksums please?
Linux,
shasum - a 256 ~/Downloads/biopython-*
md5sum ~/Downloads/biopython-*
Mac OS X,
shasum - a 256 ~/Downloads/biopython-*
md5 ~/Downloads/biopython-*
(Checksum tools suggestions for Windows welcome)
You can use the mailing list, GitHub issue, or email me directly:
<a class="moz-txt-link-freetext" href="https://github.com/biopython/biopython.github.io/issues/7">https://github.com/biopython/biopython.github.io/issues/7</a>
Don't worry about repeating checksums for files other people
have reported, a little duplication here is a good thing ;)
With hindsight it would have been good security practice to have
included the checksums of our releases with the Biopython release
announcements (and SHA256 would be better than MD5). We'll
do that in future:
<a class="moz-txt-link-freetext" href="https://github.com/biopython/biopython.github.io/issues/56">https://github.com/biopython/biopython.github.io/issues/56</a>
Thank you,
Peter
(Speaking here as a Biopython developer. I am also the on
the Open Bioinformatics Foundation board as the current
secretary, and volunteer to do some of the lighter SysAdmin
work on the OBF servers)
</pre>
</blockquote>
</blockquote>
<pre wrap="">_______________________________________________
Biopython-dev mailing list
<a class="moz-txt-link-abbreviated" href="mailto:Biopython-dev@mailman.open-bio.org">Biopython-dev@mailman.open-bio.org</a>
<a class="moz-txt-link-freetext" href="http://mailman.open-bio.org/mailman/listinfo/biopython-dev">http://mailman.open-bio.org/mailman/listinfo/biopython-dev</a>
</pre>
</blockquote>
<br>
<pre class="moz-signature" cols="72">--
_________________________________
Dr. Markus Piotrowski
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Lehrstuhl für Pflanzenphysiologie
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Tel. xx49-(0)234-3224290
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