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Issue #3460 has been updated by Peter Cock.
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<p>Oh good, since you are on the mailing list, let's continue this there - see <a class="external" href="http://mailman.open-bio.org/pipermail/biopython-dev/2016-April/021363.html">http://mailman.open-bio.org/pipermail/biopython-dev/2016-April/021363.html</a></p>
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<h1><a href="https://redmine.open-bio.org/issues/3460#change-15278">Feature #3460: Enhancement: network analysis tool PyPanda</a></h1>
<ul><li>Author: David van IJzendoorn</li>
<li>Status: Migrated</li>
<li>Priority: Normal</li>
<li>Assignee: Biopython Dev Mailing List</li>
<li>Category: Other</li>
<li>Target version: 1.64</li>
<li>URL: https://github.com/davidvi/pypanda</li></ul>
<p><a class="external" href="http://dx.doi.org/10.1371/journal.pone.0064832">http://dx.doi.org/10.1371/journal.pone.0064832</a><br />PANDA (Passing Attributes between Networks for Data Assimilation) is a gene regulatory network inference method that uses message-passing to integrate multiple sources of 'omics data.</p>
<p>PANDA was first released in C++ but now we've created a python implementation of the PANDA algorithm that is both faster than the C++ version (because we now use matrix operations) and has more features.</p>
<p><a class="external" href="https://github.com/davidvi/pypanda">https://github.com/davidvi/pypanda</a></p>
<p>Would you be interested in adding pypanda to biopython? I would be willing to maintain the code.</p>
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