<html><head><meta http-equiv="Content-Type" content="text/html charset=us-ascii"></head><body style="word-wrap: break-word; -webkit-nbsp-mode: space; -webkit-line-break: after-white-space;" class="">I also have wrote my own cd hit parser. However, a cohesive working parser in Biopython would be awesome. <div class=""><br class=""></div><div class="">Jordan<br class=""><div><blockquote type="cite" class=""><div class="">On Nov 12, 2015, at 5:48 PM, Iddo Friedberg <<a href="mailto:idoerg@gmail.com" class="">idoerg@gmail.com</a>> wrote:</div><br class="Apple-interchange-newline"><div class=""><div dir="ltr" style="font-family: Helvetica; font-size: 12px; font-style: normal; font-variant: normal; font-weight: normal; letter-spacing: normal; orphans: auto; text-align: start; text-indent: 0px; text-transform: none; white-space: normal; widows: auto; word-spacing: 0px; -webkit-text-stroke-width: 0px;" class="">Sounds great! Can you out those up on github?<br class=""></div><div class="gmail_extra" style="font-family: Helvetica; font-size: 12px; font-style: normal; font-variant: normal; font-weight: normal; letter-spacing: normal; orphans: auto; text-align: start; text-indent: 0px; text-transform: none; white-space: normal; widows: auto; word-spacing: 0px; -webkit-text-stroke-width: 0px;"><br class=""><div class="gmail_quote">On Thu, Nov 12, 2015 at 7:31 PM, Krishna Roskin<span class="Apple-converted-space"> </span><span dir="ltr" class=""><<a href="mailto:krishnaroskin@gmail.com" target="_blank" class="">krishnaroskin@gmail.com</a>></span><span class="Apple-converted-space"> </span>wrote:<br class=""><blockquote class="gmail_quote" style="margin: 0px 0px 0px 0.8ex; border-left-width: 1px; border-left-color: rgb(204, 204, 204); border-left-style: solid; padding-left: 1ex;"><div dir="ltr" class="">Iddo,<br class=""><div class=""><br class=""></div><div class="">I wrote a CD-HIT parser, as well as a dnaclust parser, and a general API for sequence based clustering. I do intended to submit it to biopython but I've been too busy.</div><div class=""><br class=""></div><div class="">Maybe that would be of interest to you? Or we could work on it together?</div><div class=""><br class=""></div><div class="">-krish</div></div><br class=""><div class="gmail_quote"><div class=""><div class="h5"><div dir="ltr" class="">On Thu, Nov 12, 2015 at 12:28 PM Iddo Friedberg <<a href="mailto:idoerg@gmail.com" target="_blank" class="">idoerg@gmail.com</a>> wrote:<br class=""></div></div></div><blockquote class="gmail_quote" style="margin: 0px 0px 0px 0.8ex; border-left-width: 1px; border-left-color: rgb(204, 204, 204); border-left-style: solid; padding-left: 1ex;"><div class=""><div class="h5"><div dir="ltr" class="">Would there be an interest in a CD-HIT parser contributed to biopython? Is someone working on one right now?<br clear="all" class=""><div class=""><br class=""></div>--<span class="Apple-converted-space"> </span><br class=""><div class="">Iddo Friedberg<br class=""><a href="http://iddo-friedberg.net/contact.html" target="_blank" class="">http://iddo-friedberg.net/contact.html</a><br class="">++++++++++[>+++>++++++>++++++++>++++++++++>+++++++++++<<<<<-]>>>>++++.><br class="">++++++..----.<<<<++++++++++++++++++++++++++++.-----------..>>>+.-----.<br class="">.>-.<<<<--.>>>++.>+++.<+++.----.-.<++++++++++++++++++.>+.>.<++.<<<+.>><br class="">>>----.<--.>++++++.<<<<------------------------------------.<br class=""></div></div></div></div>_______________________________________________<br class="">Biopython-dev mailing list<br class=""><a href="mailto:Biopython-dev@mailman.open-bio.org" target="_blank" class="">Biopython-dev@mailman.open-bio.org</a><br class=""><a href="http://mailman.open-bio.org/mailman/listinfo/biopython-dev" rel="noreferrer" target="_blank" class="">http://mailman.open-bio.org/mailman/listinfo/biopython-dev</a></blockquote></div></blockquote></div><br class=""><br clear="all" class=""><br class="">--<span class="Apple-converted-space"> </span><br class=""><div class="gmail_signature">Iddo Friedberg<br class=""><a href="http://iddo-friedberg.net/contact.html" target="_blank" class="">http://iddo-friedberg.net/contact.html</a><br class="">++++++++++[>+++>++++++>++++++++>++++++++++>+++++++++++<<<<<-]>>>>++++.><br class="">++++++..----.<<<<++++++++++++++++++++++++++++.-----------..>>>+.-----.<br class="">.>-.<<<<--.>>>++.>+++.<+++.----.-.<++++++++++++++++++.>+.>.<++.<<<+.>><br class="">>>----.<--.>++++++.<<<<------------------------------------.<br class=""></div></div><span style="font-family: Helvetica; font-size: 12px; font-style: normal; font-variant: normal; font-weight: normal; letter-spacing: normal; orphans: auto; text-align: start; text-indent: 0px; text-transform: none; white-space: normal; widows: auto; word-spacing: 0px; -webkit-text-stroke-width: 0px; float: none; display: inline !important;" class="">_______________________________________________</span><br style="font-family: Helvetica; font-size: 12px; font-style: normal; font-variant: normal; font-weight: normal; letter-spacing: normal; orphans: auto; text-align: start; text-indent: 0px; text-transform: none; white-space: normal; widows: auto; word-spacing: 0px; -webkit-text-stroke-width: 0px;" class=""><span style="font-family: Helvetica; font-size: 12px; font-style: normal; font-variant: normal; font-weight: normal; letter-spacing: normal; orphans: auto; text-align: start; text-indent: 0px; text-transform: none; white-space: normal; widows: auto; word-spacing: 0px; -webkit-text-stroke-width: 0px; float: none; display: inline !important;" class="">Biopython-dev mailing list</span><br style="font-family: Helvetica; font-size: 12px; font-style: normal; font-variant: normal; font-weight: normal; letter-spacing: normal; orphans: auto; text-align: start; text-indent: 0px; text-transform: none; white-space: normal; widows: auto; word-spacing: 0px; -webkit-text-stroke-width: 0px;" class=""><a href="mailto:Biopython-dev@mailman.open-bio.org" style="font-family: Helvetica; font-size: 12px; font-style: normal; font-variant: normal; font-weight: normal; letter-spacing: normal; orphans: auto; text-align: start; text-indent: 0px; text-transform: none; white-space: normal; widows: auto; word-spacing: 0px; -webkit-text-stroke-width: 0px;" class="">Biopython-dev@mailman.open-bio.org</a><br style="font-family: Helvetica; font-size: 12px; font-style: normal; font-variant: normal; font-weight: normal; letter-spacing: normal; orphans: auto; text-align: start; text-indent: 0px; text-transform: none; white-space: normal; widows: auto; word-spacing: 0px; -webkit-text-stroke-width: 0px;" class=""><a href="http://mailman.open-bio.org/mailman/listinfo/biopython-dev" style="font-family: Helvetica; font-size: 12px; font-style: normal; font-variant: normal; font-weight: normal; letter-spacing: normal; orphans: auto; text-align: start; text-indent: 0px; text-transform: none; white-space: normal; widows: auto; word-spacing: 0px; -webkit-text-stroke-width: 0px;" class="">http://mailman.open-bio.org/mailman/listinfo/biopython-dev</a></div></blockquote></div><br class=""></div></body></html>