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<div class="">Keep in mind there are significant changes for BLAST+ XML output in the latest release, not all of them good IMHO. Peter has a pretty good writeup on this:</div>
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<div class=""><a href="http://blastedbio.blogspot.com/2015/07/blast-xml-2-include-trouble.html" class="">http://blastedbio.blogspot.com/2015/07/blast-xml-2-include-trouble.html</a></div>
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<div class="">chris</div>
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<div class="">On Jul 29, 2015, at 12:21 AM, Wibowo Arindrarto <<a href="mailto:w.arindrarto@gmail.com" class="">w.arindrarto@gmail.com</a>> wrote:</div>
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<div class="">Hi Travis,<br class="">
<br class="">
There hasn't been any new test cases added for BLAST 2.2.30, as I<br class="">
recall. Did you get the same behavior when using Bio.SearchIO to parse<br class="">
it?<br class="">
<br class="">
Best regards,<br class="">
Bow<br class="">
<br class="">
On Wed, Jul 29, 2015 at 7:12 AM, Travis Wrightsman <<a href="mailto:twrig002@ucr.edu" class="">twrig002@ucr.edu</a>> wrote:<br class="">
<blockquote type="cite" class="">Biopython Devs,<br class="">
<br class="">
I was trying to parse through a tblastn XML output with multiple queries in<br class="">
the query file and it was generating a BLAST record object for each contig<br class="">
in the subject file instead of each run. Is this the intended behavior or<br class="">
has this not been updated for ncbi tools 2.2.30?<br class="">
<br class="">
If it needs to be updated or finished, I'm more than happy to rewrite or<br class="">
update some of the code in NCBIXML for the latest version.<br class="">
<br class="">
-Travis<br class="">
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