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Issue #3388 has been updated by Peter Cock.
<ul>
<li><strong>Status</strong> changed from <i>New</i> to <i>Closed</i></li>
<li><strong>% Done</strong> changed from <i>0</i> to <i>100</i></li>
</ul>
<p>General annotation was included in Biopython 1.61</p>
<p>Closing in favour of <a class="external" href="https://github.com/biopython/biopython/issues/516">https://github.com/biopython/biopython/issues/516</a> for per-column annotation.</p>
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<h1><a href="https://redmine.open-bio.org/issues/3388#change-15276">Feature #3388: add annotation and letter_annotations attributed for Bio.Align.MultipleSeqAlignment. object</a></h1>
<ul><li>Author: saverio vicario</li>
<li>Status: Closed</li>
<li>Priority: Normal</li>
<li>Assignee: Biopython Dev Mailing List</li>
<li>Category: Main Distribution</li>
<li>Target version: </li>
<li>URL: </li></ul>
<p>At the moment I could not add annotation at alignment level. annotation could be usefull for tracking info linked to the loci ( i.e. name of domain), while letter annotation could be usefull to track quality score of alignment or if the sites belong to a given character set.<br />In particular when to alignment are merged it would be usefull tha the bounduary of the merge is tracked<br />for example in Letter annotation of the merge of an alignment a with 10 sites and b of 5 sites the letter_annotations would be as following</p>
<p>{locus1:'111111111100000',locus2:'000000000011111'} <br />this could be usefull also to annotate the 3 position of codons
{pos1:'1001001001',pos2:'0100100100', pos3:'0010010010'}</p>
<p>If this letter_annotation would be supported the annotation could be kept across merging and splitting of the alignment</p>
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