[Bioperl-pipeline] Notice on the modification on XMLImporter

[Shawn Hoon]

Hi Juguang,
	good to see some development on biopipe.
Sorry I haven't reply to your last mail. I will try and compose one 
soon.
Before, u get into the XML stuff, just note that I have committed some 
time back a
schema based xml validation. This didn't change biopipe xml schema too 
much, except that
the global definition part of the xml is no longer allowed. The schema 
definition is called pipeline.xsd in
the xml directory and the script used to validate the xml is in 
scripts/validate_xml.pl. This requires
the module: XML::Validator::Schema;
just wanted to made sure u are aware of this.

cheers

shawn


On May 10, 2004, at 5:50 AM, Juguang XIAO wrote:

> For biopipe developers only.
>
> I move some logics in 930-line Bio::Pipeline::XMLImporter into 
> Bio::Pipeline::AbstractXMLImporter, which now is the parent module of 
> XMLImporter. The method moves are
>
> 1. accessor methods for qw(dbhost dbname dbuser dbpass schema xml dba)
>
> 2. _prepare_dba
>
> 3. _prepare_xso
>
> After the XMLImporter module is slimed, I do the same on 
> XMLImporter::run methods to move some logic out into subroutine in 
> XMLImporter, such as _parse_global, _parse_rules, _parse_jobs.
>
> Juguang
>
>
> _______________________________________________
> bioperl-pipeline mailing list
> bioperl-pipeline at bioperl.org
> http://bioperl.org/mailman/listinfo/bioperl-pipeline
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