[Bioperl-pipeline] Re: <dev docs> innovated converter subsystem, integrating more closely to the biopipe core.

[Shawn Hoon]

> 
>    <converter id="1" module="FeaturePairToEnsEMBLConverter">
>       <method name="new" rank="1">
>          <argument tag = "-host" value = "mysql"/>
>          <argument tag = "-driver" value = "mysql"/>
>          <argument tag = "-dbname" value = "juguang_homo_core_9_30"/>
>          <argument tag = "-user" value = "root"/>
>          <argument id = "15" tag = "-passwd" value = ""/ >
>          <argument tag="-analysis_logic_name" value="RepeatMask"/>
>       </method >
>       <method name="contig_name" rank="2">
>          <argument value="INPUT" type="SCALAR" rank="1"/>
>       </method>
>       <method name="convert" rank="3"/>
>   </converter>
> 
> After:
> 
>    <converter id="1" module="FeaturePairToEnsEMBLConverter">
>       <method name="new" rank="1"/ >
>       <method name="contig_name" rank="2">
>          <argument value="INPUT" type="SCALAR" rank="1"/>
>       </method>
>       <method name="convert" rank="3"/>
>   </converter>

good work!

So the converter is creating the ensembl analysis object according to the biopipe analysis table?

Also, next week lets sit down with kiran and spec'd out how we wanna write the XMLs..cuz your flavor seems
to be a little different from his.


shawn

> 
> 
> Enjoy the neat xml :)
> 
> Juguang.
> 

-- 
********************************
* Shawn Hoon
* http://www.fugu-sg.org/~shawnh
********************************