[Bioperl-pipeline] [Question] Pipeline vs. PBS

[Sang Chul Choi]

Dear Stupka!

Firstly, thank you for your advices about PBS.

After a few weeks of rest from Biopipe, I have started to
work with it on PBS. If this question is not good, I also think so, 
just ignore it. Because the answer could be long and long 
and you could be bored.

The Question is :
I have got PBS source and installed it into my Linux,
I started three daemons, pbs_server, pbs_sched, pbs_mom
with creating queue.
After configuring PipeConf.pm of Biopipe like queue name,
I finally have run PipelineManager which originally work in local
mode.
That did not work as I expected. ( I would like to cry )

The error was that qsub of PBS command failed due to 
security problem of PBS. I ran directly qsub like this:
=================================
qsub -q dque /tmp//8.pbs
=================================
The error output was
=================================
qsub: Bad UID for job execution
=================================

Of course, this question seems not to be for Biopipe. 
Would you let me know any solution? I am sorry for asking 
a not-for-biopipe question.

In addition to that, is there any helpful document about PBS
configuration related to Biopipe?

Aagin, again, I am sorry for bothering Biopipe Developers and 
you with this tedious question.

Sincerely yours,

Sang Chul Choi