[Bioperl-pipeline] any hope of getting the example to work?

[Andy Nunberg]

Hi all,
since I cant get the first script in your example to work because of the
XML module, do you have any ideas how to fix this?  can you send an older
verision that works?
I have real life assignment and it would be nice to use the pipeline to solve.

I have some public BACs and I wish to BLAST them against our propriatary
sequences and graphically see where the hits are in relation to features on
the BAC(genes, repeats , etc..).  I have been trying to read the EnsEMBL
site, but I find it very difficult to find the info I need to learn how to
do basic things like set up an ensembl database(which I learned from your
website not theirs) and how to load genbank files into it.  

I'd love to see a course at the O'Reilly meeting where I can learn to do
these basic things. (IE How to set up EnsEMBL database and populate with
your own data..  How to setup a basic bioperl-pipeline..I'd be happy just
setting up a couple of BLASTs!)

Thanks
Andy


*******************************************************************
Andy Nunberg, Ph.D
Computational Biologist
Orion Genomics, LLC 
(314) 615-6989
http://www.oriongenomics.com