[Bioperl-pipeline] decent genbank parser

[Andy Nunberg]

Hi,
I know there has been a big debate on bioperl list about genbank parsers. I
admit I wasnt following it very closely.
I'd rather as you first ,
Is there a parser that retains the organization of the features ?  That is,
keeps track of the exons for a given gene, utr's etc...?

I tried parsing a BAC genbank file with bioperl, but it flattens everything
out (using Bio::SeqIO).  

Thanks
Andy
*******************************************************************
Andy Nunberg, Ph.D
Computational Biologist
Orion Genomics, LLC 
(314) 615-6989
http://www.oriongenomics.com