[Bioperl-pipeline] pipeline connections

[Elia Stupka]

> runner.pl runs them in order, with evals. so if they fails next one gets run.

If it fails does it get rerun later? Isn't it most likely that if one
fails all will fail because that node is screwy? How do you let LSF know
things are not going well and that it should migrate the runner.pl job to
another node?

Elia

> 
> so we either have to call the Batchsubmission object n times or once.
> 
> 
> shawn
> 
> 
> On Mon, 23 Sep 2002, Elia Stupka wrote:
> 
> > > The idea of batching a bunch of jobs to nodes is 'in the future' we
> > > can save time...just issuing one bsub command and the node can run n
> > > jobs at once.
> > 
> > But you agree it's not worth doing for genewises, right?
> > 
> > Elia
> > 
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> 
> 

Elia

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