[Bioperl-pipeline] General questions (not genewise matters ;-)
Wiepert, Mathieu
Wiepert.Mathieu@mayo.edu
Fri, 6 Sep 2002 07:49:41 -0500
Sorry about that, forgot to change the subject line...
> Hi,
>
> I had a few questions about how I might want to set some
> things up. Here is my set-up:
>
> I have a local Linux box, set up with mySQL,
> bioperl-pipeline, and what I think are al the required other
> parts (bioperl-run, etc). I also have a blast server
> available to me, but it is not on the same machine. So I
> need to somehow remotely invoke all the nice commands I want
> (We have blast, EMBOSS, genscan, etc, on a few other
> production servers).
>
> Is this something that is simple to do? I only started
> thinking about it when I was reading the example in the
> bioperl-pipeline-run page, and it said I needed Blast and
> RepeatMask binaries installed. I can't yet set up a db on
> the production machine, and not sure if I will ever be able
> to, at least on the same machine.
>
> I haven't really thought much about it, I can rsh to the
> machines, I can telnet to them and have accounts on them all.
> On our cluster, we don't have a load balancer, so I wrote a
> script that distributes my blasts to all the nodes on it, so
> I imagine I would have to run that remotely, and then somehow
> suck my output back.
>
> So, is this a silly idea? I assume I am not the only one in
> this situation, what have others done?
>
> -Mat
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