[Bioperl-pipeline] Annotation example error

McWilliam, Sean (LI, Uni of Queensland) Sean.McWilliam@csiro.au
Fri, 18 Oct 2002 15:59:42 +1000


Hi,

	I have been trying to run the example annotation at 
http://www.biopipe.org/bioperl-pipeline-run.html

I think I have everything set up as detailed but when I run Xml2db.pl as
follows

perl Xml2Db.pl -dbhost localhost -dbname annotate_pipeline -dbuser *******
-dbpass ****** -p templates/genomic_sequence_annotation.xml

I get the following error message

Using existing db annotate_pipelineReading Data_setup xml   :
templates/genomic_sequence_annotation.xml
Doing DBAdaptor and IOHandler setup
Doing Pipeline Flow Setup
Doing Analysis..
Doing Rules
Doing Job Setup...
DBD::mysql::st execute failed: Column 'current' cannot be null at
/usr/local/ensembl/bioperl-pipeline/Bio/Pipeline/SQL/RuleAdaptor.pm line 85,
<STDIN> line 1.
DBD::mysql::st execute failed: Column 'current' cannot be null at
/usr/local/ensembl/bioperl-pipeline/Bio/Pipeline/SQL/RuleAdaptor.pm line 85,
<STDIN> line 1.

Any helpful advice would be greatly appreciated, couldn't find anything in
the archives.

Cheers,
Sean

============================
Sean McWilliam
CSIRO Livestock Industries
Level 3 Gehrmann Labs
Research Road
University of Queensland
St Lucia, 4072

email:	sean.mcwilliam@csiro.au
phone:	07 3346 2504
fax: 	 	07 3214 2480
============================