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<p>Hi Chris,</p>
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<p>This is great news und will facilitate our container building process.</p>
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<p>I also hope this enables many projects to use the most recent tech stack on debian based distributions (many projects I got involved were using CentOS and now found themselves in a bad position as the support ended in June this year).</p>
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<p>Greetings,</p>
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<p>Kai<br>
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<div id="divRplyFwdMsg" dir="ltr"><font face="Calibri, sans-serif" style="font-size:11pt" color="#000000"><b>Von:</b> Fields, Christopher J <cjfields@illinois.edu><br>
<b>Gesendet:</b> Mittwoch, 18. September 2024 14:51:11<br>
<b>An:</b> Schlachter, Kai<br>
<b>Cc:</b> bioperl-l@bioperl.org<br>
<b>Betreff:</b> Re: [Bioperl-l] [Extern] - Re: Support for MariaDB in Bio::DB:SeqFeature:Store::DBI::</font>
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<div>Thanks Kai. I merged that request and will work on a new point release for CPAN
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<div>Chris
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<blockquote type="cite">On Sep 5, 2024, at 6:35 AM, Schlachter, Kai <kai.schlachter@dkfz-heidelberg.de> wrote:<br>
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<p class="MsoNormal"><span style="font-size:11.0pt;font-family:"Calibri",sans-serif;mso-fareast-language:EN-US">Hi,<o:p></o:p></span></p>
<p class="MsoNormal"><span style="font-size:11.0pt;font-family:"Calibri",sans-serif;mso-fareast-language:EN-US"><o:p> </o:p></span></p>
<p class="MsoNormal"><span lang="EN-US" style="font-size:11.0pt;font-family:"Calibri",sans-serif;mso-fareast-language:EN-US">just to give you an update:<o:p></o:p></span></p>
<p class="MsoNormal"><span lang="EN-US" style="font-size:11.0pt;font-family:"Calibri",sans-serif;mso-fareast-language:EN-US">For the purpose I needed it, I was able to change the files to use MariaDB.<o:p></o:p></span></p>
<p class="MsoNormal"><span lang="EN-US" style="font-size:11.0pt;font-family:"Calibri",sans-serif;mso-fareast-language:EN-US">See the following pull request:<o:p></o:p></span></p>
<p class="MsoNormal"><span lang="EN-US" style="font-size:11.0pt;font-family:"Calibri",sans-serif;mso-fareast-language:EN-US"><a href="https://urldefense.com/v3/__https://github.com/bioperl/Bio-DB-SeqFeature/pull/4__;!!DZ3fjg!-QX_z6zzyv4Wfl0sG0ILBNkvGSm0XUsW1FwDZtQGbo18vGmLvLHiaY8DSClaWt0ttUvPazvFJM6IIp84XoVjwj8TbAEBSQmWT7-Shxc$">https://github.com/bioperl/Bio-DB-SeqFeature/pull/4</a><o:p></o:p></span></p>
<p class="MsoNormal"><span lang="EN-US" style="font-size:11.0pt;font-family:"Calibri",sans-serif;mso-fareast-language:EN-US"><o:p> </o:p></span></p>
<p class="MsoNormal"><span lang="EN-US" style="font-size:11.0pt;font-family:"Calibri",sans-serif;mso-fareast-language:EN-US">Greetings,<o:p></o:p></span></p>
<p class="MsoNormal"><span lang="EN-US" style="font-size:11.0pt;font-family:"Calibri",sans-serif;mso-fareast-language:EN-US">Kai Schlachter<o:p></o:p></span></p>
<p class="MsoNormal"><span lang="EN-US" style="font-size:11.0pt;font-family:"Calibri",sans-serif;mso-fareast-language:EN-US"><o:p> </o:p></span></p>
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<p class="MsoNormal"><b><span style="font-size:12.0pt;font-family:"Calibri",sans-serif;color:black">Von:
</span></b><span style="font-size:12.0pt;font-family:"Calibri",sans-serif;color:black">Bioperl-l <bioperl-l-bounces@bioperl.org> im Auftrag von "Schlachter, Kai" <kai.schlachter@dkfz-heidelberg.de><br>
<b>Datum: </b>Mittwoch, 4. September 2024 um 14:44<br>
<b>An: </b>"bioperl-l@bioperl.org" <bioperl-l@bioperl.org><br>
<b>Betreff: </b>Re: [Bioperl-l] [Extern] - Re: Support for MariaDB in Bio::DB:SeqFeature:Store::DBI::<o:p></o:p></span></p>
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<p class="MsoNormal"><span style="font-size:11.0pt;font-family:"Calibri",sans-serif"><o:p> </o:p></span></p>
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<p class="MsoNormal"><span style="font-size:11.0pt;font-family:"Calibri",sans-serif;mso-fareast-language:EN-US">Hi,<o:p></o:p></span></p>
<p class="MsoNormal"><span style="font-size:11.0pt;font-family:"Calibri",sans-serif;mso-fareast-language:EN-US"><o:p> </o:p></span></p>
<p class="MsoNormal"><span lang="EN-US" style="font-size:11.0pt;font-family:"Calibri",sans-serif;mso-fareast-language:EN-US">So I did my first steps towards creating a perl module although I am not a perl expert.<o:p></o:p></span></p>
<p class="MsoNormal"><span lang="EN-US" style="font-size:11.0pt;font-family:"Calibri",sans-serif;mso-fareast-language:EN-US">I also created a pull request to add MariaDB-Support to the project.<o:p></o:p></span></p>
<p class="MsoNormal"><span lang="EN-US" style="font-size:11.0pt;font-family:"Calibri",sans-serif;mso-fareast-language:EN-US">I did not find any test specifications, so I left those out of scope for the moment.<o:p></o:p></span></p>
<p class="MsoNormal"><span lang="EN-US" style="font-size:11.0pt;font-family:"Calibri",sans-serif;mso-fareast-language:EN-US"><o:p> </o:p></span></p>
<p class="MsoNormal"><span lang="EN-US" style="font-size:11.0pt;font-family:"Calibri",sans-serif;mso-fareast-language:EN-US">I will also try to see what happens if I add the module manually to our containers as long as it is not included in CPAN.<o:p></o:p></span></p>
<p class="MsoNormal"><span lang="EN-US" style="font-size:11.0pt;font-family:"Calibri",sans-serif;mso-fareast-language:EN-US"><o:p> </o:p></span></p>
<p class="MsoNormal"><span lang="EN-US" style="font-size:11.0pt;font-family:"Calibri",sans-serif;mso-fareast-language:EN-US">Greetings,<o:p></o:p></span></p>
<p class="MsoNormal"><span lang="EN-US" style="font-size:11.0pt;font-family:"Calibri",sans-serif;mso-fareast-language:EN-US"><o:p> </o:p></span></p>
<p class="MsoNormal"><span lang="EN-US" style="font-size:11.0pt;font-family:"Calibri",sans-serif;mso-fareast-language:EN-US">Kai Schlachter<o:p></o:p></span></p>
<p class="MsoNormal"><span lang="EN-US" style="font-size:11.0pt;font-family:"Calibri",sans-serif;mso-fareast-language:EN-US"><o:p> </o:p></span></p>
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<p class="MsoNormal"><b><span lang="EN-US" style="font-size:12.0pt;font-family:"Calibri",sans-serif;color:black">Von:
</span></b><span lang="EN-US" style="font-size:12.0pt;font-family:"Calibri",sans-serif;color:black">Bioperl-l <bioperl-l-bounces@bioperl.org> im Auftrag von "Fields, Christopher J" <cjfields@illinois.edu><br>
<b>Datum: </b>Mittwoch, 4. September 2024 um 00:02<br>
<b>An: </b>Timothy Parnell <timothy.parnell@hci.utah.edu>, "bioperl-l@bioperl.org" <bioperl-l@bioperl.org><br>
<b>Betreff: </b>[Extern] - Re: [Bioperl-l] Support for MariaDB in Bio::DB:SeqFeature:Store::DBI::<o:p></o:p></span></p>
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<p class="MsoNormal"><span lang="EN-US" style="font-size:11.0pt;font-family:"Calibri",sans-serif"><o:p> </o:p></span></p>
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<p class="MsoNormal"><span lang="EN-US" style="font-size:11.0pt">I agree, this should be a simple way to get it going, and though it would likely result in code duplication it could eventually require settings specific to MariaDB (though as Tim mentioned it’s
essentially a drop in replacement).<o:p></o:p></span></p>
<p class="MsoNormal"><span lang="EN-US" style="font-size:11.0pt"><o:p> </o:p></span></p>
<p class="MsoNormal"><span lang="EN-US" style="font-size:11.0pt">Kai, if you want to make a fork and then submit a pull request, I’m more than happy to test and add this to a new release. One thing that would be beneficial is if you can get some basic tests
running for it; IIRC this is a bit hacked in for the various DBI plugin modules.<o:p></o:p></span></p>
<p class="MsoNormal"><span lang="EN-US" style="font-size:11.0pt"><o:p> </o:p></span></p>
<p class="MsoNormal"><span lang="EN-US" style="font-size:11.0pt">chris<o:p></o:p></span></p>
<p class="MsoNormal"><span lang="EN-US" style="font-size:11.0pt"><o:p> </o:p></span></p>
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