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On September 4, 2018 at 12:31:28 PM, Carnë Draug (<a href="mailto:carandraug+dev@gmail.com">carandraug+dev@gmail.com</a>) wrote:</div>
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<div>On Tue, 4 Sep 2018 at 16:43, Fields, Christopher J<span class="Apple-converted-space"> </span><br>
<cjfields@illinois.edu> wrote:<span class="Apple-converted-space"> </span><br>
><span class="Apple-converted-space"> </span><br>
> On September 4, 2018 at 9:41:53 AM, Carnë Draug (carandraug+dev@gmail.com) wrote:<span class="Apple-converted-space"> </span><br>
>><span class="Apple-converted-space"> </span><br>
>> ...<span class="Apple-converted-space"> </span><br>
>><span class="Apple-converted-space"> </span><br>
>> I have pushed the changes. This required changes to the following<span class="Apple-converted-space"> </span><br>
>> repos:<span class="Apple-converted-space"> </span><br>
>><span class="Apple-converted-space"> </span><br>
>> Bio-Biblio<span class="Apple-converted-space"> </span><br>
>> Bio-EUtilities<span class="Apple-converted-space"> </span><br>
>> Bio-SearchIO-Writer-BSMLResultWriter<span class="Apple-converted-space"> </span><br>
>> bioperl-live<span class="Apple-converted-space"> </span><br>
>><span class="Apple-converted-space"> </span><br>
>> Not sure if the change is worth a new patch release. I also did not<span class="Apple-converted-space"> </span><br>
>> mention the change on the Changelog because again, I'm not sure if<span class="Apple-converted-space"> </span><br>
>> this worth a note.<span class="Apple-converted-space"> </span><br>
>><span class="Apple-converted-space"> </span><br>
>> The issue remains on the Bio-Graphics package but that's not really<span class="Apple-converted-space"> </span><br>
>> part of bioperl anyway and I never get a reply from them about bug<span class="Apple-converted-space"> </span><br>
>> reports and patches anyway.<span class="Apple-converted-space"> </span><br>
>><span class="Apple-converted-space"> </span><br>
>> I have also removed the `-w` flag on all other modules and scripts,<span class="Apple-converted-space"> </span><br>
>> which covered many other repositories, but I done it on the day I sent<span class="Apple-converted-space"> </span><br>
>> the first email.<span class="Apple-converted-space"> </span><br>
>><span class="Apple-converted-space"> </span><br>
>> Carnë<span class="Apple-converted-space"> </span><br>
><span class="Apple-converted-space"> </span><br>
> We’re probably overdue for a patch release. I still see some odd<span class="Apple-converted-space"> </span><br>
> random travis-ci fails with bioperl but restarting them seems to fix<span class="Apple-converted-space"> </span><br>
> them, not sure why. I do see a more serious fail on Bio-EUtilities<span class="Apple-converted-space"> </span><br>
> that’s worth investigating, something that is going on with espell:<span class="Apple-converted-space"> </span><br>
><span class="Apple-converted-space"> </span><br>
> https://travis-ci.org/bioperl/Bio-EUtilities<span class="Apple-converted-space"> </span><br>
><span class="Apple-converted-space"> </span><br>
<br>
That's not really because of my change. Looking at the build history<span class="Apple-converted-space"> </span><br>
[1], it has been failing for 9 months, since this change [2].<span class="Apple-converted-space"> </span><br>
<br>
I have fixed it now [3].<span class="Apple-converted-space"> </span><br>
<br>
Carnë<span class="Apple-converted-space"> </span><br>
<br>
[1] https://travis-ci.org/bioperl/Bio-EUtilities/builds<span class="Apple-converted-space"> </span><br>
[2] https://github.com/bioperl/Bio-EUtilities/commit/f5ad9e6c4d95<span class="Apple-converted-space"> </span><br>
[3] https://github.com/bioperl/Bio-EUtilities/commit/c723180987c3<span class="Apple-converted-space"> </span></div>
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<p>\o/ Thanks for catching that! </p>
<p>chris</p>
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