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Yep, that’s what Carnë set up: <a href="https://github.com/bioperl/Bio-Tools-Phylo-PAML" class="">https://github.com/bioperl/Bio-Tools-Phylo-PAML</a>
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<div class="">Carnë, can you go ahead and merge the commits removing these? I can work on a version bump, and at least get a new 1.7.x point release out.<br class="">
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<div class="">Chris</div>
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<div class="">On Sep 8, 2017, at 11:45 AM, Jason Stajich <<a href="mailto:jason.stajich@ucr.edu" class="">jason.stajich@ucr.edu</a>> wrote:</div>
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<div dir="auto" class="">Prob package the Run and parser code in same distr as well I think?</div>
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<div dir="auto" class="">Jason </div>
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<div class="">On Fri, Sep 8, 2017 at 9:44 AM Jason Stajich <<a href="mailto:jason.stajich@ucr.edu" class="">jason.stajich@ucr.edu</a>> wrote:<br class="">
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<div dir="auto" class="">Absolutely. A separate package here makes</div>
<div dir="auto" class="">Complete sense and wouid hopefully make it easier to fix and update as needed. Is anyone actively willing to maintain format chasing of PAML? </div>
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<div class="">On Fri, Sep 8, 2017 at 8:32 AM Fields, Christopher J <<a href="mailto:cjfields@illinois.edu" target="_blank" class="">cjfields@illinois.edu</a>> wrote:<br class="">
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I personally think splitting these out into a separate PAML-specific distribution is a great idea, variations with PAML has always been hard to keep up with. I’ll have a look at the documentation as well, if there is a way to do this for each Bio::Tools application
it paves the way for combining the wrappers and parsers into separate distributions if needed.<br class="">
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Jason, you’re listed as key contributor for bioperl PAML development, any thoughts?<br class="">
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Chris<br class="">
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> On Sep 7, 2017, at 2:12 PM, Carnë Draug <<a href="mailto:carandraug%2Bdev@gmail.com" target="_blank" class="">carandraug+dev@gmail.com</a>> wrote:<br class="">
><br class="">
> Hi<br class="">
><br class="">
> I have been preparing a new distribution for Bio::Tools::Phylo::PAML<br class="">
> and related modules [1] which I would like to make a release of.<br class="">
><br class="">
> To avoid clashes with existing installations, I would like to have a<br class="">
> new release of bioperl-live and bioperl-run soon. Is this possible?<br class="">
> I already have commits ready for bioperl-live and bioperl-run that<br class="">
> will remove the files.<br class="">
><br class="">
> On a related topic, I updated the instructions on how to prepare a new<br class="">
> perl distribution from a subset of modules [2] and made a new release<br class="">
> of the bioperl distzilla plugin bundle [3] (will take a few hours<br class="">
> before it is indexed in metacpan).<br class="">
><br class="">
> Carnë<br class="">
><br class="">
> [1] <a href="https://urldefense.proofpoint.com/v2/url?u=https-3A__github.com_bioperl_Bio-2DTools-2DPhylo-2DPAML&d=DwMFaQ&c=8hUWFZcy2Z-Za5rBPlktOQ&r=fbHa8Njtvh9VmSnzJxiEUTW9NWDwMMwQAzhgZDO41GQ&m=FMzJFCTUTiFNP0CYUtJrtcCUwSWZf9GRIDfyRd7KR30&s=n2vZ4HT2Fz0aOhSgB-M6_6imHSs7hpN_VZ_7nR5kUek&e=" rel="noreferrer" target="_blank" class="">
https://github.com/bioperl/Bio-Tools-Phylo-PAML</a><br class="">
> [2] <a href="https://urldefense.proofpoint.com/v2/url?u=http-3A__bioperl.org_howtos_split-2Dnew-2Ddistribution.html&d=DwMFaQ&c=8hUWFZcy2Z-Za5rBPlktOQ&r=fbHa8Njtvh9VmSnzJxiEUTW9NWDwMMwQAzhgZDO41GQ&m=FMzJFCTUTiFNP0CYUtJrtcCUwSWZf9GRIDfyRd7KR30&s=dobD8z9YEhpdu1ToasbnMhLFpA7-FelyuS9-RL46J4c&e=" rel="noreferrer" target="_blank" class="">
http://bioperl.org/howtos/split-new-distribution.html</a><br class="">
> [3] <a href="https://urldefense.proofpoint.com/v2/url?u=https-3A__metacpan.org_pod_Dist-3A-3AZilla-3A-3APluginBundle-3A-3ABioPerl&d=DwMFaQ&c=8hUWFZcy2Z-Za5rBPlktOQ&r=fbHa8Njtvh9VmSnzJxiEUTW9NWDwMMwQAzhgZDO41GQ&m=FMzJFCTUTiFNP0CYUtJrtcCUwSWZf9GRIDfyRd7KR30&s=tU-y3qglEAMExRrf5wVvK5qgO3zevwpYJ9U5IemfQsg&e=" rel="noreferrer" target="_blank" class="">
https://metacpan.org/pod/Dist::Zilla::PluginBundle::BioPerl</a><br class="">
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Sent from Gmail Mobile<br class="">
<a href="mailto:Jason.stajich@ucr.edu" target="_blank" class="">Jason.stajich@ucr.edu</a><br class="">
Jason Stajich - UC Riverside<br class="">
<a href="https://urldefense.proofpoint.com/v2/url?u=http-3A__lab.stajich.org&d=DwMFaQ&c=8hUWFZcy2Z-Za5rBPlktOQ&r=fbHa8Njtvh9VmSnzJxiEUTW9NWDwMMwQAzhgZDO41GQ&m=FMzJFCTUTiFNP0CYUtJrtcCUwSWZf9GRIDfyRd7KR30&s=GafVyc8jqXq8HLi7hSWiFr75Zipnuta5o2VFQzkRTrc&e=" target="_blank" class="">http://lab.stajich.org</a></div>
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<div class="gmail_signature" data-smartmail="gmail_signature">Sent from Gmail Mobile<br class="">
<a href="mailto:Jason.stajich@ucr.edu" class="">Jason.stajich@ucr.edu</a><br class="">
Jason Stajich - UC Riverside<br class="">
<a href="https://urldefense.proofpoint.com/v2/url?u=http-3A__lab.stajich.org&d=DwMFaQ&c=8hUWFZcy2Z-Za5rBPlktOQ&r=fbHa8Njtvh9VmSnzJxiEUTW9NWDwMMwQAzhgZDO41GQ&m=FMzJFCTUTiFNP0CYUtJrtcCUwSWZf9GRIDfyRd7KR30&s=GafVyc8jqXq8HLi7hSWiFr75Zipnuta5o2VFQzkRTrc&e=" class="">http://lab.stajich.org</a></div>
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