<p dir="ltr">Yeah, the cleanly part is what I hope to make happen, maybe splitting blast out makes sense there too. Will give it a go<br>
MAJ</p>
<br/><div class="cm_quote" style=" color: #787878">On Fri, Aug 22, 2014 at 11:47 AM, Fields, Christopher J <<a href="mailto:cjfields@illinois.edu">cjfields@illinois.edu</a>> wrote:</div><br><div id="oldcontent" style="background-color: rgb(255, 255, 255); background-position: initial initial; background-repeat: initial initial;"><blockquote style=""><p dir="ltr">Actually, it might be better to have all the BLAST-related stuff as one distribution, unless we can get bioperl-run installing much more cleanly (little overhead with few dependencies). Is that what you want to do? If so: cool!
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You should have commit to bioperl-run BTW, you are listed as part of the developer team.
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chris
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On Aug 22, 2014, at 7:09 AM, Mark A. Jensen <maj@fortinbras.us> wrote:
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> Thanks Chris-- yes, you must be right. I just did a quick grep for "StandAloneBlast" in the modules. I will verify and leave bl2seq alone.
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> Will do everything in branches and then give the signal-
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> cheers MAJ
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> On 2014-08-21 23:50, Fields, Christopher J wrote:
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>> On Aug 21, 2014, at 9:37 PM, George Hartzell <hartzell@alerce.com> wrote:
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>>
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>>> Mark A. Jensen writes:
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>>>> [...]
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>>>> My simple proposal is to move these three modules from bioperl-live to
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>>>> bioperl-run. (Only AlignIO/bl2seq.pm depends on StandAloneBlast, btw).
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>>>>
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>>>> Thoughts?
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>>>> [...]
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>>>
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>>> Speaking from a safe distance, that sounds *wonderful*.
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>>>
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>>> g.
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>>
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>> Agreed. Also, I think you mean that StandAloneBlast has a dependency
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>> on AlignIO::bl2seq, not the other way around, correct? At least, I
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>> didn’t see anything there.
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>>
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>> If no one objects to it (give it a day), I say go ahead and move it over.
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>>
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>> chris
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>
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