[Bioperl-l] Converting pdb files to dssp file

Brian Osborne briano at bioteam.net
Mon Sep 1 14:17:43 UTC 2014


Vandana,

Bio::Structure::IO::pdb reads and writes PDB format, but Bio::Structure::SecStr::DSSP::Res only reads *dssp files.

I don’t think this conversion is possible with BioPerl.

Brian O.

On Aug 30, 2014, at 11:08 PM, vandana Baranwal <lovevandu08 at gmail.com> wrote:

> Hello
> Is is possible to convert a pdb file int dssp file using bioperl. I searched a lot but didn't get a fruitful answer.
> I want to convert approximately 1000 pdb files into dssp files.
> 
> Any help will be highly appreciated
> 
> -- 
> Thanks & Regards
> Vandana Kumari
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