[Bioperl-l] warning: Bio::Index::Fastq;

EpiMAN eh_mcb at yahoo.com
Mon Mar 10 13:18:29 UTC 2014


Hi,

I want to index a fastq file and then extract the sequences by their IDs:

I used the following code to make an index:

perl index.pl index file.fastq

========================================
#index.pl
use strict;
use warnings;
use Bio::Index::Fastq;


my $Index_File_Name = shift;

my $inx = Bio::Index::Fastq->new('-filename'
=>$Index_File_Name,'-write_flag'=>1);
$inx->make_index(@ARGV);
===========

I get a lot of warnings like:
.
.
.
--------------------- WARNING ---------------------
MSG: overwriting a current value stored for
@@DDDDDFFFFFIIIDCBBBB##############################################################################
.
.
.
.












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