[Bioperl-l] bioperl-ext

Thiago Venancio thiago.venancio at gmail.com
Thu Jan 31 17:10:39 UTC 2013


Hi all,

I am trying to install bioperl-ext and the compilation gives me the error:

/usr/bin/ld: libs/libsw.a(aln.o): relocation R_X86_64_32 against `.rodata' 
can not be used when making a shared object; recompile with -fPIC
libs/libsw.a: could not read symbols: Bad value
collect2: ld returned 1 exit status
make[1]: *** [blib/arch/auto/Bio/Ext/Align/Align.so] Error 1
make[1]: Leaving directory 
`/home/thiago/temp/bioperl-ext-master/Bio/Ext/Align'
make: *** [subdirs] Error 2

However, the Makefile says that -fPIC is already being used, which is 
puzzling me.

Any clues ?

Thanks.
Thiago






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