[Bioperl-l] Abot prot_param code :)

[Joel Martin]

first, use bioperl-live.  the url for protparam has changed since
1.6.901 was released.

second, the example code is a bit off, replace the start with this,
it's just adding the
use lines and changing "my $pp = Protparam..." to "my $pp =
Bio::Tools::Protparam..."

use Bio::DB::GenBank;
use Bio::Tools::Protparam;

my $gb = new Bio::DB::GenBank(-retrievaltype => 'tempfile' ,
                                -format => 'Fasta');
my @ids=qw(O14521 O43709 O43826);
my $seqio = $gb->get_Stream_by_acc(\@ids );
  while( my $seq =  $seqio->next_seq ) {
    my $pp = Bio::Tools::Protparam->new(seq=>$seq->seq);
# it's correct from that line on down

On Wed, May 2, 2012 at 10:49 AM, guillermo romero <biorges at gmail.com> wrote:
> To whom it may concern,
>
> I am reading your prot param source code (
> http://cpansearch.perl.org/src/CJFIELDS/BioPerl-1.6.901/Bio/Tools/Protparam.pm)
> and i am wondering how to use it: How do I execute it? Which are the
> parameters needed to use it?
>
> Sincere thanks
>
> Cheers
>
>
> Guillermo Romero
> University of Mexico
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