[Bioperl-l] Bioperl module for simulated reads

Jason Stajich jason.stajich at gmail.com
Thu Jun 23 20:10:50 UTC 2011


that's great that you are contributing this, but we should see about spliting any new modules/code off from the main trunk though - per the GSoC project.

On Jun 23, 2011, at 12:34 PM, Florent Angly wrote:

> Hi all,
> 
> I just wanted to let me know that, in the context of my program that generates simulated amplicon and shotgun datasets, Grinder (https://sourceforge.net/projects/biogrinder/files/biogrinder/), I developed a Bioperl module that facilitates taking simulated reads from a reference sequences. I called it Bio::Seq::SimulatedRead: https://github.com/bioperl/bioperl-live/blob/master/Bio/Seq/SimulatedRead.pm. I welcome testing and feedback!
> 
> Florent
> _______________________________________________
> Bioperl-l mailing list
> Bioperl-l at lists.open-bio.org
> http://lists.open-bio.org/mailman/listinfo/bioperl-l





More information about the Bioperl-l mailing list