[Bioperl-l] API for frame() has changed??

[Brian Osborne]

http://www.bioperl.org/wiki/HOWTO:SearchIO


On Jun 13, 2011, at 7:50 AM, Jordi Durban wrote:

> Hi all!
> I tried to use an outdated perl script and I got this warning:
> *
> --------------------- WARNING ---------------------
> MSG: API for frame() has changed.
> Please refer to documentation for Bio::Search::HSP::GenericHSP;
> returning query frame
> ------------------------------**---------------------*
> 
> It could be possible as the script has:
> 
> *my $strand = $hsp->strand();
> my $frame = $hsp->frame();*
> 
> And I didn't found the strand() and frame() in Bio::Search::HSP::GenericHSP.
> Anyone knows how can I obtain such information from
> Bio::Search::HSP::GenericHSP??
> I tried to get it from Bio::Search::Hit::HitI but I think it returns the
> information from the best blast hit, doesn't it?
> Thanks a lot
> 
> -- 
> Jordi
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