[Bioperl-l] please help: bp_genbank2gff3.pl problems

Ravi Devani ravi.devani89 at gmail.com
Sat Jul 9 17:28:32 UTC 2011


i tried to convert the .gbk file of hydra genome from ncbi ftp site to .gff3
format for displaying it on gbrowse. .gbk file was 1.4gb in size while the
gff3 file gave the size of over 255gb before my hard disk was full and the
conversion stopped.. when i examined the gff3 file i found that the same
feature was repeated many times.. how to solve this problem..However the
.gbk file for mitochondrial genome of hydra got converted successfully using
the same script.. i have attached some part of the .gff3 file which shows
the same lines repeating many times..
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