[Bioperl-l] How to find the SNPs which are from frequent to rare using Perl programming?

Elina ppurkayastha2010 at gmail.com
Sat Jan 29 05:45:14 UTC 2011


How can i find out what are the changes(SNPs)in the sequence which are from
frequent to rare( frequent codon to rare codon) from codon usage table of
human ? what will be the concept behind writing a program?

for example for amino acid T ACC=>0.36 is the frequent codon and ACG=>0.11
is the rare codon.

http://old.nabble.com/file/p30792714/codon_usage_h_sapiens.gif 
http://old.nabble.com/file/p30792714/BARD1SNP.txt BARD1SNP.txt 
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