[Bioperl-l] fasta to fastq

[shalabh sharma]

Hi,
  @Adam, Peter.
     Thanks a lot , "Merging with Bioperl worked".
Actually i was looking exactly something like this.

Thanks
Shalabh


On Mon, Feb 21, 2011 at 10:13 AM, Peter Cock <p.j.a.cock at googlemail.com>wrote:

> On Mon, Feb 21, 2011 at 2:44 PM, shalabh sharma
> <shalabh.sharma7 at gmail.com> wrote:
> > Hi,
> >    Is there any module that can convert fasta and qual files to FASTQ
> > format?
> > I found lot of programs that can do it the other way but not fasta to
> fastq.
> >
> > I would really appreciate your help.
> >
> > Thanks
> > Shalabh
>
> Hi,
>
> Yes, you can do FASTA+QUAL to FASTQ with BioPerl, see:
>
> http://www.bioperl.org/wiki/Merging_separate_sequence_and_quality_files_to_FASTQ
>
> For comparison the Biopython Tutorial has a Python example
> (section "Converting FASTA and QUAL files into FASTQ files"):
> http://biopython.org/DIST/docs/tutorial/Tutorial.html
> http://biopython.org/DIST/docs/tutorial/Tutorial.pdf
>
> Peter
>