[Bioperl-l] ESummary document

Luis-Miguel Rodríguez Rojas lmrodriguezr at gmail.com
Sat Apr 23 14:39:24 UTC 2011


Does anyone now how can I initialize a
Bio::Tools::EUtilities::Summary::DocSum object from a DocSum file?

Say, a script contains the following code:

my $factory = Bio::DB::EUtilities->new(-eutil => 'esummary', ...);

Which effectively saves an eSummaryResult XML file in $file.  If I want to
retrieve the result from within the script, it is easy:

my $docsum = $factory->next_DocSum;

But, what about reading the file from another script?  I did not find
related documentation.

Thanks, and congrats for the recent release.

Luis M. Rodriguez-R
[ http://thebio.me/lrr ]
UMR Résistance des Plantes aux Bioagresseurs - Group effecteur/cible
Institut de Recherche pour le Développement, Montpellier, France
[ http://bioinfo-prod.mpl.ird.fr/xantho | Luismiguel.Rodriguez at ird.fr ]
+33 (0)

Unidad de Bioinformática del Laboratorio de Micología y Fitopatología
Universidad de Los Andes, Bogotá, Colombia
[ http://lamfu.uniandes.edu.co | luisrodr at uniandes.edu.co ]
+57 (1) ext 2777

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