[Bioperl-l] hmmer3/hmmscan parser

[Kai Blin]

On Tue, 2010-05-25 at 13:41 +0200, Kai Blin wrote:

Whined a little too early.

> I've tried using the hmmer3 parser for my script, but it seems like the
> hmm_name member of the result object isn't set, and I'm using that.
> 
> I saw this before when trying to write a test case that integrates into
> the Bioperl test framework.
> (Error output is Can't locate object method "hmm_name" via package
> "Bio::Search::Result::hmmer3Result" at t/SearchIO/hmmer3.t line 23,
> <GEN1> line 152.)

I just found the stuff I needed to add to the hmmer3Result.pm file. I'm
currently busy adding a comprehensive test case for this module that
integrates into the bioperl test harness.

What's the best way to publish my additions? Do I create a fork of
bioperl-live on Github or how is this handled?

Cheers,
Kai

-- 
Dipl.-Inform. Kai Blin         kai.blin at biotech.uni-tuebingen.de
Interfakultäres Institut für Mikrobiologie und Infektionsmedizin
Abteilung Mikrobiologie/Biotechnologie
Eberhard-Karls-Universität Tübingen
Auf der Morgenstelle 28                 Phone : ++49 7071 29-78841
D-72076 Tübingen                        Fax : ++49 7071 29-5979
Deutschland
Homepage: http://www.mikrobio.uni-tuebingen.de/ag_wohlleben