[Bioperl-l] Fwd: [Bioperl-guts-l] [Bug 3031] Unable to parse algorithm_reference from BLAST reports using Bio::SearchIO
razi.khaja at gmail.com
Tue Mar 23 00:55:42 UTC 2010
I've submitted a patch (blast.pm.diff) to bugzilla to enhance Bio/SearchIO/
blast.pm to be able to parse the algorithm_reference from BLAST reports.
I've also submitted a patch (blast.t.diff) of 26 additional tests to parse
the algorithm_reference from many of the BLAST reports in the t/data dir in
I'd like to get the patch into bioperl-live and would like someone to review
the patch and tests.
If the architecture for BLAST report parsing is changing, can someone let me
know and I can contribute my efforts there.
Below are links to bugzilla.
---------- Forwarded message ----------
From: <bugzilla-daemon at portal.open-bio.org>
Date: Fri, Mar 19, 2010 at 11:25 AM
Subject: [Bioperl-guts-l] [Bug 3031] Unable to parse algorithm_reference
from BLAST reports using Bio::SearchIO
To: bioperl-guts-l at bioperl.org
------- Comment #2 from razi.khaja at gmail.com 2010-03-19 11:25 EST -------
Created an attachment (id=1462)
patch for t/SearchIO/blast.t to perform 26 additional tests to parse
algorithm_reference from many BLAST report files
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