[Bioperl-l] unambiguous assembly of fastq reads into fastq sequences combining q-scores

Albert Vilella avilella at gmail.com
Wed Mar 10 08:55:09 UTC 2010

Hi all,

I would like to know if anyone knows of a script or method in bioperl
to do an unambiguous assembly of fastq sequences, combining the q-scores to
give assembled fastq sequences as the output.

By unambiguous I mean something like what abyss would produce with this options:

ABYSS -k$k -b0 -t0 -e0 -c0

but giving assembled fastq sequences with combined q-scores as output
instead of simple
fasta assembled sequences.

Thanks in advance

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