[Bioperl-l] How to retrieve the Gene Info from the hit genomes start and end positions in the blast table report?

Bhakti Dwivedi bhakti.dwivedi at gmail.com
Tue Mar 9 20:58:34 UTC 2010


I have a blastn and blastx report (both in blast table m-8 format) against
the ncbi nr database.  Based on the Hits Start and End positions, how can I
retrieve the gene name/acc/id?  The blast table does show the hit organism
accession number, but what I want is specifically the gene to which it is
hitting to.

Is there a way to do this in bioperl?


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