[Bioperl-l] Bio::TreeIO, Root-tip branch lengths

Jun Inoue j.inoue at ucl.ac.uk
Sat Nov 14 19:20:29 UTC 2009


Dear All,

I just started to learn BioPerl for phylogenetics.
Usually I am using perl v5.10.0 on my Mac OS 10.5.8.
I would like to ask you a hint to calculate the Branch lengths
from root to tip for all species in NEWICK TREE format.

Please see the following web site.
I am explaining what I want to do and
showing my easy script (not completed).
http://www.geocities.jp/ancientfishtree/BioPerl_BLRootTip.html

Thank you for your help.

Best,
Jun Inoue
http://www.geocities.jp/ancientfishtree/index_eng.html



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