[Bioperl-l] problem with install

eric_donaldson at med.unc.edu eric_donaldson at med.unc.edu
Sun Dec 13 23:15:24 UTC 2009


Hello,

Today I downloaded bioperl 1.61 on my new macbook pro using fink.  I used the 

fink install bioperl.pm-588 as I could not get it to instal using the perl version 5.10.

But now I get an error when trying to run a bioperl script.

Here is the error:

Can't locate Bio/Tools/BPlite.pm in @INC (@INC contains: /sw/lib/perl5/darwin-thread-multi-2level /sw/lib/perl5 /sw/lib/perl5/darwin /Library/Perl/Updates/5.10.0 /System/Library/Perl/5.10.0/darwin-thread-multi-2level /System/Library/Perl/5.10.0 /Library/Perl/5.10.0/darwin-thread-multi-2level /Library/Perl/5.10.0 /Network/Library/Perl/5.10.0/darwin-thread-multi-2level /Network/Library/Perl/5.10.0 /Network/Library/Perl /System/Library/Perl/Extras/5.10.0/darwin-thread-multi-2level /System/Library/Perl/Extras/5.10.0 .) at blastparser.pl line 8.
BEGIN failed--compilation aborted at blastparser.pl line 8.


I am a novice at unix and bioperl so I do not know how to troubleshoot this, would you please hleo me?

Thank you,

Eric


Eric F. Donaldson, Ph.D.
Research Assistant Professor, Ralph Baric Lab
University of North Carolina
Department of Epidemiology


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