[Bioperl-l] Install help errors

[Hilmar Lapp]

I don't understand what's going wrong in your install but note that  
Sendu said you need to install a /nightly build/ (which by definition  
you can't pull from CPAN) because the fix to the issue you tripped  
over is so recent.

Nightly builds are at

http://www.bioperl.org/DIST/nightly_builds/bioperl-live.tar.gz

	-hilmar

On Jul 9, 2008, at 4:32 PM, snoze pa wrote:

> Hilmar,
>
> Here are results of fresh  bioperl installation from cvs. Seems it is
> not even installing the bioperl properly.
>
>> perl -MCPAN -e shell
> cpan>install Bundle::CPAN
> cpan>q
>
>> cpan
> cpan>install Module::Build
> cpan>o conf prefer_installer MB
> cpan>o conf commit
> cpan>q
>
>> cpan
> cpan[1]> d /bioperl/
> CPAN: Storable loaded ok (v2.18)
> Going to read /root/.cpan/Metadata
>  Database was generated on Wed, 09 Jul 2008 19:02:50 GMT
> CPAN: YAML loaded ok (v0.66)
> Going to read /root/.cpan/build/
> ............................................................................DONE
> Found 16 old builds, restored the state of 10
> Distribution    BIRNEY/bioperl-1.2.1.tar.gz
> Distribution    BIRNEY/bioperl-1.2.2.tar.gz
> Distribution    BIRNEY/bioperl-1.2.3.tar.gz
> Distribution    BIRNEY/bioperl-1.2.tar.gz
> Distribution    BIRNEY/bioperl-1.4.tar.gz
> Distribution    BIRNEY/bioperl-db-0.1.tar.gz
> Distribution    BIRNEY/bioperl-ext-1.4.tar.gz
> Distribution    BIRNEY/bioperl-gui-0.7.tar.gz
> Distribution    BIRNEY/bioperl-run-1.2.2.tar.gz
> Distribution    BIRNEY/bioperl-run-1.4.tar.gz
> Distribution    BOZO/Fry-Lib-BioPerl-0.15.tar.gz
> Distribution    CRAFFI/Bundle-BioPerl-2.1.8.tar.gz
> Distribution    SENDU/bioperl-1.5.2_102.tar.gz
> Distribution    SENDU/bioperl-db-1.5.2_100.tar.gz
> 14 items found
>
> cpan[2]> install S/SE/SENDU/bioperl-1.5.2_102.tar.gz
> Running Build for S/SE/SENDU/bioperl-1.5.2_102.tar.gz
>  Has already been unwrapped into directory
> /root/.cpan/build/bioperl-1.5.2_102-Dx59Dg
>  Has already been made
> Running Build test
>
> Test Summary Report
> -------------------
> t/Biblio_eutils          (Wstat: 0 Tests: 6 Failed: 1)
>  Failed test:  6
>  Parse errors: Bad plan.  You planned 5 tests but ran 6.
> t/BioFetch_DB            (Wstat: 0 Tests: 27 Failed: 1)
>  Failed test:  27
> t/HtSNP                  (Wstat: 65280 Tests: 0 Failed: 0)
>  Non-zero exit status: 255
>  Parse errors: Bad plan.  You planned 7 tests but ran 0.
> Files=236, Tests=12000, 366 wallclock secs ( 7.79 usr  1.28 sys +
> 174.92 cusr 10.07 csys = 194.06 CPU)
> Result: FAIL
> Failed 3/236 test programs. 2/12000 subtests failed.
>  SENDU/bioperl-1.5.2_102.tar.gz
>  ./Build test -- NOT OK
> //hint// to see the cpan-testers results for installing this module,  
> try:
>  reports SENDU/bioperl-1.5.2_102.tar.gz
> Running Build install
>  Already done
> Failed during this command:
> SENDU/bioperl-1.5.2_102.tar.gz               : make_test NO
>
> Any Idea
> _______________________________________________
> Bioperl-l mailing list
> Bioperl-l at lists.open-bio.org
> http://lists.open-bio.org/mailman/listinfo/bioperl-l

-- 
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: Hilmar Lapp  -:-  Durham, NC  -:-  hlapp at gmx dot net :
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