[Bioperl-l] [BioSQL-l] Bio::Annotation issues with BioSQL
cjfields at illinois.edu
Wed Aug 20 20:25:55 UTC 2008
On Aug 20, 2008, at 1:43 PM, Mark Johnson wrote:
>> I could make B::A::StructuredValue work the same way, but I'm not
>> sure what
>> it provides that B::A::Tagtree doesn't. The latter uses Data::Stag
>> under the
>> hood, which is much cleaner, and more extensible in the future.
> Perhaps B::A::StructuredValue should be deprecated?
Probably. The only place it was used in core was SeqIO::swiss (and
now that uses Tagtree in bioperl-live).
Let me know if you have any problems with Bio::Annotation::Tagtree. I
am planning on doing some more work with it soon.
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