[Bioperl-l] no revcom method in Bio::Seq module?

Marc Logghe Marc.Logghe at DEVGEN.com
Sun May 14 20:28:34 UTC 2006


Hi Li,
> doesn't work. Then I read documentation of Bio::Seq and it 
> looks like it doesn't contain revcom method.
Here, the Deobfuscator interface that Mauricio announced earlier, comes
in handy.
http://bioperl.org/cgi-bin/deob_interface.cgi?Search=Search&module=Bio%3
A%3ASeq&sort_order=by+method&search_string=
If you look in the methods table, you will find out that the revcom
method is inherited from, and implemented by Bio::PrimarySeqI.
HTH,
Marc 




More information about the Bioperl-l mailing list