[Bioperl-l] Bio::SearchIO fix posted in Bugzilla

Chris Fields cjfields at uiuc.edu
Sat Feb 18 23:35:22 UTC 2006


Added a fix for the blastn and tblastx problems with Bio::SearchIO  
text parsing of BLAST 2.2.13 output:

http://bugzilla.open-bio.org/show_bug.cgi?id=1934

The extra lines "Features in this part of subject sequence" and the  
following descriptive lines are passed over using a loop.  See the  
bug report for specifics.

Cheers,

Christopher Fields
Postdoctoral Researcher
Lab of Dr. Robert Switzer
Dept of Biochemistry
University of Illinois Urbana-Champaign






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