[Bioperl-l] installing bioperl-ext

Thomas J Keller kellert at ohsu.edu
Thu Nov 10 17:32:35 EST 2005


Greetings,
Trying to install the bioperl-ext-1.5.1 extensions
I'm getting the following error:
Writing Makefile for Bio::Ext::Align
ERROR from evaluation of /usr/local/bioperl-ext-1.5.1/Bio/SeqIO/ 
staden/Makefile.PL: Invalid version '' for Bio::SeqIO::staden::read.
Must be of the form '#.##'. (For instance '1.23')
at ./Makefile.PL line 4


I installed the io_lib-1.8.11 in /usr/local/lib, /usr/local/include/ 
io_lib and /usr/local/bin (default locations)
This isn't the "undefined symbol error" mentioned in the readme. I  
looked at the Makefile in Bio/SeqIO/staden but I don't see the problem:


Any suggestions?
running OS X 10.4.3 on an Apple G5.

Thanks,




More information about the Bioperl-l mailing list