[Bioperl-l] error installing bioperl-db

Andrew Stewart astew at wam.umd.edu
Tue Jul 19 18:03:19 EDT 2005


I'm having a problem while trying to install the bioperl-db modules.  
While trying to run a make test, I get the following error:

t/01dbadaptor.....ok 
1/13                                                   
------------- EXCEPTION  -------------
*MSG: Failed to load module Bio::DB::DBI::postgresql*. Can't locate 
Bio/DB/DBI/postgresql.pm in @INC (@INC contains: t 
/usr/local/bioperl-db/blib/lib /usr/local/bioperl-db/blib/arch 
/sw/lib/perl5/5.8.1/darwin-thread-multi-2level /sw/lib/perl5/5.8.1 
/sw/lib/perl5 /sw/lib/perl5/darwin /Users/astew/usr/lib 
/System/Library/Perl/5.8.1/darwin-thread-multi-2level 
/System/Library/Perl/5.8.1 
/Library/Perl/5.8.1/darwin-thread-multi-2level /Library/Perl/5.8.1 
/Library/Perl /Network/Library/Perl/5.8.1/darwin-thread-multi-2level 
/Network/Library/Perl/5.8.1 /Network/Library/Perl .) at 
/sw/lib/perl5/5.8.1/Bio/Root/Root.pm line 396.

STACK Bio::Root::Root::_load_module /sw/lib/perl5/5.8.1/Bio/Root/Root.pm:398
STACK Bio::DB::SimpleDBContext::dbi 
/usr/local/bioperl-db/blib/lib/Bio/DB/SimpleDBContext.pm:296
STACK Bio::DB::BioSQL::DBAdaptor::new 
/usr/local/bioperl-db/blib/lib/Bio/DB/BioSQL/DBAdaptor.pm:85
STACK Bio::DB::BioDB::new /usr/local/bioperl-db/blib/lib/Bio/DB/BioDB.pm:203
STACK DBTestHarness::get_DBAdaptor t/DBTestHarness.pm:257
STACK DBTestHarness::get_DBContext t/DBTestHarness.pm:272
STACK toplevel t/01dbadaptor.t:23

--------------------------------------
t/01dbadaptor.....dubious                                                    

        Test returned status 2 (wstat 512, 0x200)
DIED. FAILED tests 2-13
        Failed 12/13 tests, 7.69% okay


Where am I supposed to find Bio::DB::DBI::postgresql ?


-Andrew Stewart


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