[Bioperl-l] Bio::Seq objects from BLAST hits

Jon manning jrm at compbio.dundee.ac.uk
Tue Jan 25 06:52:58 EST 2005


Hi all,

I have previously used Bio::DB::SwissProt to retrieve sequence objects
using accession numbers derived from a BLAST search, which I
subsequently aligned. Now I'm using BLAST to search the PDB (though I'm
only interested in sequences), so don't have Bio::DB module for that.
What would be the best way to derive a Bio::Seq object from the
Bio::Hit::BlastHit objects?

Thanks,

Jon 



More information about the Bioperl-l mailing list