[Bioperl-l] retrieve entry name using searchIO

Anders Stegmann anst at kvl.dk
Sun Dec 25 06:36:37 EST 2005


Marry christmas BioPerl!

By using SearchIO I can retrieve the number of entries in my database file, but can I also retrieve each entry's header/identifier?

The thing is that I have a file containing a whole genome.That is, all chromosomes are gathered in one file. I would like to know which chromosome my query seq is hitting with when I am blasting.

Regards Anders.



More information about the Bioperl-l mailing list