[Bioperl-l] Getting Alignment Score from Bio::Tools::Run::Alignment::TCoffee

Edward WIJAYA ewijaya at singnet.com.sg
Wed Apr 20 07:49:11 EDT 2005


Thanks so much Jason,
Works ok now.

On Wed, 20 Apr 2005 23:03:44 +0800, Jason Stajich <jason.stajich at duke.edu>  
wrote:

> passing them to what the tcoffee alignment factory?  You need to  
> construct them as Bio::Seq objects first.
> my @seqs = (Bio::Seq->new(-seq => 'ATGC', -display_id => 'one'),
> 	               Bio::Seq->new(-seq => 'ATGCAA', -display_id => 'two'));
>

[snip]

>
> On Apr 20, 2005, at 6:07 AM, Edward WIJAYA wrote:
>
>> How about passing input sequence as an array? Is it possible?
[snip]

-- 
Regards,
Edward WIJAYA
SINGAPORE


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