[Bioperl-l] more questins about SearchIO

[Jason Stajich]

It is not part of the report so you need to get that information from 
another source, GenBank and EMBL for example.  The handy Bio::DB::EMBL 
and Bio::DB::GenBank would let you retrieve a sequence given an 
accession number.

If you are doing this a lot and only want species information you can 
download a mapping of just GI to taxa ID which is part of the genbank 
taxonomy database download from NCBI.

-jason

On Nov 26, 2004, at 4:58 AM, Javier Terol wrote:

>  Hi!
>
>  One more question about SearchIO:
>
>  Is it possible to get the species of the hit sequence? I could not 
> find such module described in the SearchIO HOWTO and I wonder if 
> anyone has solved the problem.
>
>  Thank you very much in advance
>
>  Javierf
>
>
>    O@@@@@       
>    @@@O@@O@      Dr. Javier Terol Alcayde
>    @O@@@@O@      Instituto Valenciano de Investigaciones Agrarias 
> (IVIA)
>    @@@O@@@@      Carretera Moncada - Náquera, Km. 4,5
>     @@@@O@       46113 Moncada (Valencia)
>       ||         Tel.     96 342 4000 ext. 70160
>      ||         Fax.    96 342 4001
>
>
>
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--
Jason Stajich
jason.stajich at duke.edu
http://www.duke.edu/~jes12/
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