[Bioperl-l] AlignIO po format broken?

[Hilmar Lapp]

Not nice. There's got to be something in the po format writer though. 
If I change the format to say pfam, the test succeeds just fine. I was 
just wondering whether it's worth digging into. Is anyone aware of some 
special stuff taking place in the po format writer that's not in any 
other writer?

	-hilmar

On Sunday, May 23, 2004, at 04:36  PM, Jason Stajich wrote:

> It must be some sort of memory or fh bug -It works fine on perl 5.8 
> but I
> can reproduce it on perl 5.6.
>
>
> -jason
>
>
> On Sun, 23 May 2004, Hilmar Lapp wrote:
>
>> When I run the tests AlignIO.t dies when writing an alignment in po
>> format, with a message that is almost as uninformative as it can
>> possibly get:
>>
>> main::(t/AlignIO.t:328):        $status = $strout->write_aln($aln);
>>    DB<1>
>> Illegal instruction
>>
>> This is on MacOSX 10.2.8, perl 5.6.0. Does anyone have any clues? Does
>> anybody else have the same problem? (This test used to run fine ...)
>>
>> 	-hilmar
>>
>
> --
> Jason Stajich
> Duke University
> jason at cgt.mc.duke.edu
>
>
-- 
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Hilmar Lapp                            email: lapp at gnf.org
GNF, San Diego, Ca. 92121              phone: +1-858-812-1757
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