[Bioperl-l] Genome location of sequences

Jonathan Manning bmb9jrm at bmb.leeds.ac.uk
Wed May 19 12:47:46 EDT 2004


Hi all,

I want to be able to locate any GenBank-derived sequence to a position
on the genome. The reason for this is that I have installed the Ensembl
API and wish to access detailed information on variation etc (which I
don't think is possible with bioperl????). Trouble is that I don't seem
to be able to access things on ensembl by a GenBank ID- at least not for
the mRNAs I'm using as an example. 

So: is there a way to lock a genbank sequence down to its position on a
genome?

Cheers,

Jon



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