[Bioperl-l] getting top blast hit

Nandita Mullapudi nandita at uga.edu
Tue Mar 30 18:19:06 EST 2004


I am currently using  Bio::SearchIO to parse tons of blast files by 
setting limits on E- value, % identity etc. I now want to parse a 
huge blast job, by getting just the top hit out of each file. 
(Assuming blast was run and hits were returned with hit with lowest E 
value first)
Is there a quick way to do this?
thanks,
-Nandita


More information about the Bioperl-l mailing list