[Bioperl-l] determining orthologs...

[Rob Edwards]

I wrote a wrapper for BLINK. At the moment it doesn't return very 
bioperly results, but it worked for what I needed.

Take a look and hack it: http://www.salmonella.org/bioperl/

I think the answer depends on what you are trying to do...

Rob


On Mar 15, 2004, at 3:45 PM, Bob Freeman wrote:

> What are BioPerl developers doing at present to determine putative 
> orthologs of a gene? BLINK? Unigene? LocusLink? And what about for 
> new/hypothetical genes?
>
> Tx,
> Bob
>
> -- 
>
> -----------------------------------------------------
> Bob Freeman, Ph.D.
> Acorn Worm Informatics
> Dept of Systems Biology, C1-514A
> Harvard Medical School
> 240 Longwood Avenue
> Boston, MA  02115
> 617/699.7057, vox
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