[Bioperl-l] Bio::SeqIO bug

michael watson (IAH-C) michael.watson at bbsrc.ac.uk
Tue Jun 22 05:28:16 EDT 2004


Hi

I am using bioperl 1.2.3 on linux.

When converting from GenBank to EMBL for the RefSeq entry NC_002945, the
following conversion occurs for CDS 2450558..2451643:

/product="Probable
nicotinate-nucleotide-dimethylbenzimidazol
phosphoribosyltransferase CobT"

To

FT
roduct="Probablenicotinate-nucleotide-dimethylbenzimidazol
FT                   phosphoribosyltransferase CobT"

Note the missing "p" from the FT entry "product", plus the missing
spaces in the product text (presumably because "\n"s have been removed,
but in this case they should be replaced by spaces)

Rather odd??

Mick



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